5NKA
Crystal Structure of Ephrin A2 (EphA2) Receptor Protein Kinase with Compound 2g
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-06-15 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 1.03320 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 32.685, 106.041, 39.689 |
Unit cell angles | 90.00, 93.80, 90.00 |
Refinement procedure
Resolution | 39.602 - 1.377 |
R-factor | 0.1608 |
Rwork | 0.160 |
R-free | 0.18200 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5i9u |
RMSD bond length | 0.016 |
RMSD bond angle | 1.591 |
Data reduction software | XDS (XDSapp 2.0) |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10.1_2155: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.602 | 1.460 |
High resolution limit [Å] | 1.377 | 1.380 |
Rmeas | 0.064 | 0.768 |
Number of reflections | 54909 | 5314 |
<I/σ(I)> | 16.81 | 2.31 |
Completeness [%] | 98.9 | 96.8 |
Redundancy | 6.69 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 291 | 37.5% MPD/PEG1000/PEG3350 (MD), 0.25 M Amino Acids Mix (MD), 0.1 M Buffer System 3 (MD) pH8.5 |