5NK6
Crystal Structure of Ephrin A2 (EphA2) Receptor Protein Kinase with Compound 2d
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-11-10 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.97625 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 32.812, 108.016, 40.623 |
Unit cell angles | 90.00, 108.80, 90.00 |
Refinement procedure
Resolution | 38.456 - 1.267 |
R-factor | 0.1719 |
Rwork | 0.171 |
R-free | 0.18580 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5i9u |
RMSD bond length | 0.006 |
RMSD bond angle | 1.054 |
Data reduction software | XDS (XDSapp 2.0) |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10.1_2155: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 38.456 | 1.340 |
High resolution limit [Å] | 1.267 | 1.270 |
Rmeas | 0.103 | |
Number of reflections | 69266 | |
<I/σ(I)> | 11.37 | 2.35 |
Completeness [%] | 97.8 | 95.3 |
Redundancy | 6.76 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 291 | 37.5% MPD/PEG1000/PEG3350 (MD), 0.1 M Amino Acids Mix (MD), 0.1 M Bis-Tris pH5.5 |