5NK3
Crystal Structure of Ephrin A2 (EphA2) Receptor Protein Kinase with Compound 1l
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 1 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-12-05 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.91990 |
Spacegroup name | P 1 |
Unit cell lengths | 32.804, 40.918, 52.010 |
Unit cell angles | 75.90, 80.88, 70.53 |
Refinement procedure
Resolution | 37.758 - 1.586 |
R-factor | 0.195 |
Rwork | 0.193 |
R-free | 0.22780 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5i9u |
RMSD bond length | 0.009 |
RMSD bond angle | 1.163 |
Data reduction software | XDS (XDSapp 2.0) |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10.1_2155: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 37.769 | 1.681 |
High resolution limit [Å] | 1.586 | 1.586 |
Rmeas | 0.109 | 1.045 |
Number of reflections | 32062 | 4935 |
<I/σ(I)> | 6.45 | 1.02 |
Completeness [%] | 95.9 | 91.6 |
Redundancy | 2.55 | 2.53 |
CC(1/2) | 0.996 | 0.506 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 291 | 37.5% MPD/PEG1000/PEG3350 (MD), 0.3 M Amino Acids Mix (MD), 0.1 M MES pH6.0 |