Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5NH8

Crystal structure of xylose isomerase from Piromyces E2 in complex with two Ca2+ ions and xylose

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsBRUKER AXS MICROSTAR-H
Temperature [K]110
Detector technologyIMAGE PLATE
Collection date2015-02-25
DetectorMARRESEARCH
Wavelength(s)1.5418
Spacegroup nameP 1
Unit cell lengths78.764, 79.337, 91.926
Unit cell angles115.41, 89.91, 117.16
Refinement procedure
Resolution46.700 - 1.860
R-factor0.17712
Rwork0.176
R-free0.20136
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)D_1200004044
RMSD bond length0.009
RMSD bond angle1.238
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0073)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]46.7001.890
High resolution limit [Å]1.8601.860
Rmerge0.0900.488
Rpim0.0710.384
Number of reflections1363865443
<I/σ(I)>10.62.1
Completeness [%]92.675.7
Redundancy43.2
CC(1/2)0.9950.602
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP29413-15 % PEG3350, 10 mM CaCl2, 0.1 M Hepes pH 7.0

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon