5NH8
Crystal structure of xylose isomerase from Piromyces E2 in complex with two Ca2+ ions and xylose
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | BRUKER AXS MICROSTAR-H |
Temperature [K] | 110 |
Detector technology | IMAGE PLATE |
Collection date | 2015-02-25 |
Detector | MARRESEARCH |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 |
Unit cell lengths | 78.764, 79.337, 91.926 |
Unit cell angles | 115.41, 89.91, 117.16 |
Refinement procedure
Resolution | 46.700 - 1.860 |
R-factor | 0.17712 |
Rwork | 0.176 |
R-free | 0.20136 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | D_1200004044 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.238 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0073) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.700 | 1.890 |
High resolution limit [Å] | 1.860 | 1.860 |
Rmerge | 0.090 | 0.488 |
Rpim | 0.071 | 0.384 |
Number of reflections | 136386 | 5443 |
<I/σ(I)> | 10.6 | 2.1 |
Completeness [%] | 92.6 | 75.7 |
Redundancy | 4 | 3.2 |
CC(1/2) | 0.995 | 0.602 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 294 | 13-15 % PEG3350, 10 mM CaCl2, 0.1 M Hepes pH 7.0 |