5NGT
Crystal structure of human MTH1 in complex with inhibitor 7-(furan-2-yl)-5-methyl-1,3-benzoxazol-2-amine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-09-15 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9184 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 36.326, 60.617, 66.672 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 44.850 - 1.540 |
R-factor | 0.18588 |
Rwork | 0.184 |
R-free | 0.22031 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3zr1 |
RMSD bond length | 0.015 |
RMSD bond angle | 1.708 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 44.850 | 1.560 |
High resolution limit [Å] | 1.540 | 1.540 |
Rmerge | 0.102 | 1.182 |
Number of reflections | 22455 | 1056 |
<I/σ(I)> | 12 | 1.6 |
Completeness [%] | 1.0 | 96.6 |
Redundancy | 7.2 | 7 |
CC(1/2) | 0.998 | 0.559 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 5 mmol/L compound and 6 mmol/L MgCl2 were added to MTH1. Sitting drop vapor diffusion experiments at 293K were performed, and MTH1 (9.34 mg/mL) was mixed with reservoir solution (32% (w/v) PEG3350, 0.1 mol/L Sodium Acetate pH 4.0 and 0.2 mol/L LiSO4) in a 1:1 ratio. |