5NFM
Crystal structure of YrbA from Sinorhizobium meliloti in complex with copper.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE BM30A |
Synchrotron site | ESRF |
Beamline | BM30A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-11-15 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.722307 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 30.752, 32.159, 62.575 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 22.425 - 0.800 |
R-factor | 0.1222 |
Rwork | 0.122 |
R-free | 0.13200 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5nfk |
RMSD bond length | 0.032 |
RMSD bond angle | 0.898 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | MOLREP |
Refinement software | PHENIX ((1.11.1_2575: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 32.160 | 0.810 |
High resolution limit [Å] | 0.800 | 0.800 |
Rmerge | 0.084 | 0.856 |
Rmeas | 0.091 | 0.927 |
Rpim | 0.034 | 0.352 |
Number of reflections | 66196 | |
<I/σ(I)> | 15 | 2.4 |
Completeness [%] | 99.9 | 99 |
Redundancy | 7 | 6.8 |
CC(1/2) | 0.999 | 0.727 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | MICROBATCH | 277 | 0.7 M lithium sulfate 0.02 M copper acetate 0.1 M Tris-HCl, pH 8.5 |