5NF4
The tip fimbrial protein Mfa3 from Porphyromonas gingivalis with C-terminal truncation.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID29 |
Synchrotron site | ESRF |
Beamline | ID29 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-07-22 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.97623 |
Spacegroup name | P 32 |
Unit cell lengths | 80.183, 80.183, 116.022 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 44.520 - 1.746 |
R-factor | 0.1506 |
Rwork | 0.148 |
R-free | 0.17730 |
RMSD bond length | 0.010 |
RMSD bond angle | 1.245 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.22) |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 69.441 | 44.520 | 1.840 |
High resolution limit [Å] | 1.721 | 5.520 | 1.750 |
Rmerge | 0.033 | 0.365 | |
Rmeas | 0.043 | 0.044 | 0.502 |
Rpim | 0.028 | 0.029 | 0.343 |
Total number of observations | 134723 | ||
Number of reflections | 79050 | ||
<I/σ(I)> | 12.2 | 16.2 | 2.1 |
Completeness [%] | 93.2 | 84.2 | 93.4 |
Redundancy | 1.7 | 1.8 | 1.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5 | 293 | 3% PGA, 8% PEG 8000, 0.3 M sodium formate, 0.12 M ammonium sulfate and 0.1 M sodium acetate, pH 5.0. |