5NE1
L2 class A serine-beta-lactamase in complex with cyclic boronate 2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-04-30 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.92819 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 70.380, 85.690, 113.180 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.845 - 2.090 |
R-factor | 0.1776 |
Rwork | 0.176 |
R-free | 0.21430 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5ne2 |
RMSD bond length | 0.010 |
RMSD bond angle | 1.249 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 44.100 | 2.140 |
High resolution limit [Å] | 2.090 | 2.090 |
Rpim | 0.126 | 0.800 |
Number of reflections | 40861 | |
<I/σ(I)> | 8 | 1.4 |
Completeness [%] | 99.3 | 99.5 |
Redundancy | 13.1 | 13.3 |
CC(1/2) | 0.992 | 0.534 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291.15 | Crystal reagent (1.5 uL): 10% w/v PEG 20000, 20% v/v PEG MME 550, 0.02 M DL-Glutamic acid; 0.02 M DL-Alanine; 0.02 M Glycine; 0.02 M DL-Lysine; 0.02 M DL-Serine, 0.1 M bicine/Trizma base pH 8.5 Protein (1 uL): 42 mg/ml, 50 mM Tris pH 7.5, 150 mM NaCl, 5 mM imidazole, 1 mM TCEP |