5NB2
Crystal structures of homooligomers of collagen type IV. alpha2NC1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALBA BEAMLINE XALOC |
Synchrotron site | ALBA |
Beamline | XALOC |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-06-25 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.979 |
Spacegroup name | I 4 2 2 |
Unit cell lengths | 94.330, 94.330, 225.618 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 112.810 - 2.500 |
R-factor | 0.2477 |
Rwork | 0.246 |
R-free | 0.27940 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1li1 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.338 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.21) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 112.809 | 112.809 | 2.640 |
High resolution limit [Å] | 2.500 | 7.910 | 2.500 |
Rmerge | 0.037 | 1.688 | |
Rmeas | 0.137 | 0.038 | 1.721 |
Rpim | 0.027 | 0.008 | 0.333 |
Total number of observations | 456608 | 14315 | 68350 |
Number of reflections | 18124 | ||
<I/σ(I)> | 24.1 | 72.6 | 2.4 |
Completeness [%] | 100.0 | 99.9 | 100 |
Redundancy | 25.2 | 21.5 | 26.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 294 | 22% polyvinylpyrrolidone K15, 0.1M Na2SO4 and Mes pH 6.5 |