5NB1
Crystal structures of homooligomers of collagen type IV. alpha4NC1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-1 |
Synchrotron site | ESRF |
Beamline | ID23-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-07-26 |
Detector | RAYONIX MX-225 |
Wavelength(s) | 0.98 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 145.580, 167.561, 155.412 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.460 - 2.820 |
R-factor | 0.2341 |
Rwork | 0.232 |
R-free | 0.28070 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1t60 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.333 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.16) |
Phasing software | PHASER |
Refinement software | REFMAC (5.6.0117) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.464 | 8.920 | 2.970 |
High resolution limit [Å] | 2.820 | 6.310 | 2.820 |
Rmerge | 0.059 | 0.367 | |
Rmeas | 0.101 | 0.065 | 0.405 |
Rpim | 0.040 | 0.026 | 0.166 |
Total number of observations | 258124 | ||
Number of reflections | 48121 | ||
<I/σ(I)> | 12.7 | 11 | 2.1 |
Completeness [%] | 98.9 | 96.9 | 99.8 |
Redundancy | 5.4 | 5.1 | 5.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 294 | 6% PEG3350, 0.2 M sodium acetate and 0.1 M Mes pH 6.5 |