5NAZ
Crystal structures of homooligomers of collagen type IV. alpha5NC1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID14-1 |
Synchrotron site | ESRF |
Beamline | ID14-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2009-11-09 |
Detector | ADSC QUANTUM 210 |
Wavelength(s) | 0.98 |
Spacegroup name | P 41 3 2 |
Unit cell lengths | 121.283, 121.283, 121.283 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.870 - 1.850 |
R-factor | 0.1855 |
Rwork | 0.185 |
R-free | 0.19040 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1t60 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.246 |
Data reduction software | XDS |
Data scaling software | SCALA (3.2.25) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 42.880 | 5.850 | 1.950 |
High resolution limit [Å] | 1.850 | 4.140 | 1.850 |
Rmerge | 0.100 | 0.047 | 0.354 |
Rmeas | 0.112 | 0.053 | 0.396 |
Rpim | 0.049 | 0.023 | 0.174 |
Total number of observations | 125648 | ||
Number of reflections | 26393 | ||
<I/σ(I)> | 12.1 | 11.7 | 2 |
Completeness [%] | 99.3 | 96.4 | 99.9 |
Redundancy | 4.8 | 4.6 | 4.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 294 | 20%PEG8000, 0.2 M NaCl, CAPS pH 10.5 |