Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5MX1

Crystal structure of human chondroadherin

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I24
Synchrotron siteDiamond
BeamlineI24
Temperature [K]100
Detector technologyPIXEL
Collection date2016-06-27
DetectorDECTRIS PILATUS3 6M
Wavelength(s)1.739
Spacegroup nameC 1 2 1
Unit cell lengths215.450, 60.700, 57.660
Unit cell angles90.00, 100.60, 90.00
Refinement procedure
Resolution58.350 - 2.170
R-factor0.1907
Rwork0.188
R-free0.23950
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1xku
RMSD bond length0.003
RMSD bond angle0.690
Data reduction softwarexia2
Data scaling softwarexia2
Phasing softwarePHENIX
Refinement softwarePHENIX (1.9_1692)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]58.4002.230
High resolution limit [Å]2.1702.170
Rmerge0.1480.840
Rpim0.0850.469
Number of reflections37325
<I/σ(I)>9.3
Completeness [%]95.875.3
Redundancy5.83.9
CC(1/2)0.9870.506
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP29510 mg/ml protein + 200 mM monobasic potassium phosphate (pH 4.8), 20% (w/v) polyethylene glycol 3350

245663

PDB entries from 2025-12-03

PDB statisticsPDBj update infoContact PDBjnumon