5MNI
Escherichia coli AGPase mutant R130A apo form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-09-21 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9795 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 94.224, 147.603, 125.572 |
Unit cell angles | 90.00, 91.52, 90.00 |
Refinement procedure
Resolution | 73.800 - 3.090 |
R-factor | 0.2373 |
Rwork | 0.235 |
R-free | 0.27270 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | E coli AGPase tetramer |
RMSD bond length | 0.005 |
RMSD bond angle | 0.682 |
Data reduction software | xia2 |
Data scaling software | xia2 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10.1_2155: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 73.800 | 3.201 |
High resolution limit [Å] | 3.090 | 3.090 |
Rmerge | 0.085 | 0.944 |
Number of reflections | 62893 | |
<I/σ(I)> | 8.86 | 1.23 |
Completeness [%] | 99.0 | 100 |
Redundancy | 3.3 | 3.4 |
CC(1/2) | 0.997 | 0.524 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 291 | Sitting drop 96 MRC2 well plates using a mosquito crystal robot (TTP Labtech). Crystals were obtained by mixing 0.25 ul of E coli AGPase_R130A at 6.3 mg/ml in 50 mM Tris-HCl pH 7.5, 100 mM NaCl with 0.25 ul of mother liquor containing 14% polyethylene glycol 3.350, 140 mM magnesium formate, 30% ethylene glycol. Crystals grew in 13 days and were frozen under liquid nitrogen. |