5MKJ

Crystal structure of the Retinoid X Receptor alpha in complex with synthetic honokiol derivative 9 and a fragment of the TIF2 co-activator.

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	PETRA III, DESY BEAMLINE P11
Synchrotron site	PETRA III, DESY
Beamline	P11
Temperature [K]	100
Detector technology	PIXEL
Collection date	2016-04-18
Detector	DECTRIS PILATUS 6M-F
Wavelength(s)	1.0331
Spacegroup name	P 43 21 2
Unit cell lengths	64.139, 64.139, 111.979
Unit cell angles	90.00, 90.00, 90.00

Refinement procedure

Resolution	45.353 - 2.500
R-factor	0.1977
Rwork	0.193
R-free	0.24470
Structure solution method	MOLECULAR REPLACEMENT
Starting model (for MR)	5ec9
RMSD bond length	0.001
RMSD bond angle	0.367
Data reduction software	iMOSFLM (7.2.1)
Data scaling software	Aimless (0.5.29)
Phasing software	PHASER (2.6.0)
Refinement software	PHENIX

Data quality characteristics

	Overall	Inner shell	Outer shell
Low resolution limit [Å]	64.140	64.140	2.600
High resolution limit [Å]	2.500	9.010	2.500
Rmerge	0.167	0.077	0.976
Rmeas	0.173
Rpim	0.045
Total number of observations	128885
Number of reflections	8650
<I/σ(I)>	12
Completeness [%]	100.0	99.9	100
Redundancy	14.9	11.7	15.9
CC(1/2)	0.997	0.997	0.788

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, HANGING DROP	7	277	0.1M PIPES, pH 7.0, 0.1M NaCl, 22% PEG 2K MME