5MJZ
Crystal structure of the His Domain Protein Tyrosine Phosphatase (HD-PTP/PTPN23) Bro1 domain (Apo structure)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I24 |
Synchrotron site | Diamond |
Beamline | I24 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-05-08 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.969 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 69.498, 64.999, 81.504 |
Unit cell angles | 90.00, 91.29, 90.00 |
Refinement procedure
Resolution | 28.490 - 1.867 |
R-factor | 0.1773 |
Rwork | 0.176 |
R-free | 0.21610 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3rau |
RMSD bond length | 0.005 |
RMSD bond angle | 0.704 |
Data reduction software | xia2 |
Data scaling software | xia2 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.11_2563: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 28.490 | 1.934 |
High resolution limit [Å] | 1.867 | 1.867 |
Rmerge | 0.125 | 0.882 |
Number of reflections | 60112 | |
<I/σ(I)> | 9.24 | 1.99 |
Completeness [%] | 99.3 | 97.25 |
Redundancy | 4.1 | 4 |
CC(1/2) | 0.995 | 0.586 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.4 | 277 | Apo- HD-PTPBro1 crystals were obtained in 0.2M L-Na-Glutamate, 0.2M Alanine, 0.2M Glycine, 0.2M Lysine HCl, 0.2M Serine, 0.1 M Imidazole; MES monohydrate at pH 6.5 and 30% Ethylene glycol, PEG8K. |