5MGS
Human receptor NKR-P1 in deglycosylated form, extracellular domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-05-07 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.97625 |
Spacegroup name | P 1 |
Unit cell lengths | 44.806, 68.404, 101.564 |
Unit cell angles | 101.88, 100.72, 100.64 |
Refinement procedure
Resolution | 48.680 - 1.900 |
R-factor | 0.157 |
Rwork | 0.157 |
R-free | 0.20700 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3t3a |
RMSD bond length | 0.018 |
RMSD bond angle | 1.782 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0131) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.680 | 1.930 |
High resolution limit [Å] | 1.900 | 1.900 |
Rmerge | 0.085 | 0.894 |
Number of reflections | 87081 | |
<I/σ(I)> | 12.9 | 1.7 |
Completeness [%] | 97.9 | 95.1 |
Redundancy | 7 | 6 |
CC(1/2) | 0.999 | 0.671 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.2 | 294 | 20% (w/v) PEG 3350, 200 mM ammonium fluoride, 200 mM lithium chloride pH 6.2, protein concentration 12 mg/ml. |