5M66
Crystal structure of S-adenosyl-L-homocysteine hydrolase from Bradyrhizobium elkanii in complex with adenosine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.2 |
Synchrotron site | BESSY |
Beamline | 14.2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-04-20 |
Detector | RAYONIX MX-225 |
Wavelength(s) | 0.918 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 106.437, 173.622, 97.425 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.900 - 1.951 |
R-factor | 0.1698 |
Rwork | 0.169 |
R-free | 0.21080 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4lvc |
RMSD bond length | 0.017 |
RMSD bond angle | 1.539 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10.1_2155: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.900 | 2.070 |
High resolution limit [Å] | 1.950 | 1.960 |
Rmerge | 0.087 | 0.740 |
Number of reflections | 130113 | |
<I/σ(I)> | 13.01 | 1.93 |
Completeness [%] | 98.9 | 96 |
Redundancy | 3.7 | 3.67 |
CC(1/2) | 0.729 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 9 | 292 | 0.3 sodium acetate, 16% PEG 4000, 0.1 M Tris pH 9.0 |