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5M41

Crystal structure of nigritoxine

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSOLEIL BEAMLINE PROXIMA 2
Synchrotron siteSOLEIL
BeamlinePROXIMA 2
Temperature [K]100
Detector technologyPIXEL
Collection date2014-03-28
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.979
Spacegroup nameI 2 3
Unit cell lengths185.160, 185.160, 185.160
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution58.000 - 2.100
R-factor0.19501
Rwork0.193
R-free0.22647
Structure solution methodSAD
RMSD bond length0.010
RMSD bond angle1.283
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareSHELXDE
Refinement softwareREFMAC (5.6.0117)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]58.0002.200
High resolution limit [Å]2.1002.100
Rmerge0.0520.330
Rpim0.0320.210
Number of reflections57805
<I/σ(I)>13.3
Completeness [%]99.297.7
Redundancy3.43.3
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP8.52922 microL of protein with 1 microL of reservoir solution, containing 100 mM Bis-Tris propane buffer at pH 8.5, 24 % (w/v) PEG 3350, 0.1 M Sodium Fluorate
1VAPOR DIFFUSION, HANGING DROP8.52922 microL of protein with 1 microL of reservoir solution, containing 100 mM Bis-Tris propane buffer at pH 8.5, 24 % (w/v) PEG 3350, 0.1 M Sodium Fluorate

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PDB entries from 2024-05-15

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