5M41
Crystal structure of nigritoxine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 2 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-03-28 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.979 |
Spacegroup name | I 2 3 |
Unit cell lengths | 185.160, 185.160, 185.160 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 58.000 - 2.100 |
R-factor | 0.19501 |
Rwork | 0.193 |
R-free | 0.22647 |
Structure solution method | SAD |
RMSD bond length | 0.010 |
RMSD bond angle | 1.283 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | SHELXDE |
Refinement software | REFMAC (5.6.0117) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 58.000 | 2.200 |
High resolution limit [Å] | 2.100 | 2.100 |
Rmerge | 0.052 | 0.330 |
Rpim | 0.032 | 0.210 |
Number of reflections | 57805 | |
<I/σ(I)> | 13.3 | |
Completeness [%] | 99.2 | 97.7 |
Redundancy | 3.4 | 3.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 292 | 2 microL of protein with 1 microL of reservoir solution, containing 100 mM Bis-Tris propane buffer at pH 8.5, 24 % (w/v) PEG 3350, 0.1 M Sodium Fluorate |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 292 | 2 microL of protein with 1 microL of reservoir solution, containing 100 mM Bis-Tris propane buffer at pH 8.5, 24 % (w/v) PEG 3350, 0.1 M Sodium Fluorate |