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5M0C

Cocrystal structure of cAMP-dependent Protein Kinase (PKA) in complex with the Fasudil-fragment isoquinoline-5-sulfonamide

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsBESSY BEAMLINE 14.1
Synchrotron siteBESSY
Beamline14.1
Temperature [K]100
Detector technologyPIXEL
Collection date2014-06-10
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.91841
Spacegroup nameP 21 21 21
Unit cell lengths72.393, 75.355, 80.196
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution37.678 - 1.734
R-factor0.1741
Rwork0.173
R-free0.20040
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1q8w
RMSD bond length0.006
RMSD bond angle0.790
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER
Refinement softwarePHENIX ((1.10.1_2155: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]43.7501.840
High resolution limit [Å]1.7301.730
Rmerge0.480
Number of reflections45445
<I/σ(I)>22.853.24
Completeness [%]98.497.3
Redundancy4.494.61
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.9277.15Drop: 10 mg/ml PKA (0.240 mM) 30 mM MBT (MES/Bis-Tris Puffer pH 6.9) 1 mM DTT 0.1 mM EDTA 75 mM LiCl 0.03 mM Mega 8 0.07mM PKI (Sigma: P7739) 0.12 mM ligand solved in DMSO (100 mM Stock) Reservoir: 14% Methanol 0.003 mL drop volume, 0.4 mL reservoir volume

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PDB entries from 2024-05-15

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