5LP2
Adhesin domain of the type 1 HopQ of Helicobacter pylori strain G27
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 1 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-12-03 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.98 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 57.700, 57.700, 285.600 |
Unit cell angles | 90.00, 90.10, 90.00 |
Refinement procedure
Resolution | 49.400 - 2.600 |
R-factor | 0.20912 |
Rwork | 0.208 |
R-free | 0.23617 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5f7k |
RMSD bond length | 0.014 |
RMSD bond angle | 1.709 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0049) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.400 | 2.740 |
High resolution limit [Å] | 2.600 | 2.600 |
Rmerge | 0.147 | 1.210 |
Number of reflections | 55541 | |
<I/σ(I)> | 7.3 | 0.9 |
Completeness [%] | 99.7 | 98.2 |
Redundancy | 4.7 | 4.5 |
CC(1/2) | 0.993 | 0.576 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293 | 0.12M alcohols (0.02M 1,6-Hexanediol; 0.02M 1-Butanol; 0.02M 1,2-Propanediol; 0.02M 2-Propanol; 0.02M 1,4-Butanediol; 0.02M 1,3-Propanediol), 0.1 M Tris (base)/BICINE pH 8.5, 20% v/v PEG 500* MME; 10 % w/v PEG 20000 |