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5LHA

Amine transaminase crystal structure from an uncultivated Pseudomonas species in the PMP-bound form

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID29
Synchrotron siteESRF
BeamlineID29
Temperature [K]100
Detector technologyPIXEL
Collection date2013-12-06
DetectorDECTRIS PILATUS3 6M
Wavelength(s)1.045400
Spacegroup nameP 21 21 21
Unit cell lengths96.790, 97.069, 153.389
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution48.530 - 1.890
R-factor0.175
Rwork0.172
R-free0.22500
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.005
RMSD bond angle0.849
Data reduction softwareXDS
Data scaling softwareAimless (0.5.27)
Phasing softwarePHASER
Refinement softwarePHENIX (dev_2313)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]48.5301.920
High resolution limit [Å]1.8901.890
Rmerge0.0990.656
Number of reflections107336
<I/σ(I)>9.4
Completeness [%]93.177.5
Redundancy3.83.6
CC(1/2)0.9960.603
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5293Crystallisation solution: 100 mM sodium malonate, pH 5.0, 12% (w/v) PEG 3350, 4% (v/v) formamid; Protein solution: 15 mg/ml protein in 50 mM Tris-HCl, pH 8.0, 0.3 M NaCl, 0.5 mM PLP; Soaking: 1 minute with 100 mM L-alanine in crystallisation solution and 20% (v/v) PEG 400

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PDB entries from 2024-05-15

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