5LCA
VIM-2 metallo-beta-lactamase in complex with 3-oxo-2-(3-(trifluoromethyl)phenyl)isoindoline-4-carboxylic acid (compound 17)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E+ SUPERBRIGHT |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-06-13 |
Detector | RIGAKU SATURN 944+ |
Wavelength(s) | 1.542 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 40.487, 65.313, 70.716 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 23.990 - 1.930 |
R-factor | 0.1342 |
Rwork | 0.130 |
R-free | 0.16970 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4c1d |
RMSD bond length | 0.009 |
RMSD bond angle | 0.647 |
Data reduction software | HKL-3000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER (2.6.0) |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.000 |
High resolution limit [Å] | 1.930 | 4.160 | 1.930 |
Rmerge | 0.043 | 0.030 | 0.093 |
Rmeas | 0.047 | ||
Rpim | 0.018 | ||
Total number of observations | 100610 | ||
Number of reflections | 14437 | ||
<I/σ(I)> | 31.7 | 2.4 | |
Completeness [%] | 98.2 | 98.2 | 97.4 |
Redundancy | 7 | 6.5 | 7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.4 | 295 | 0.25 M Magnesium formate, 22.0% (v/v) Polyethylene glycol 3350, 5 mM 3-oxo-2-(3-(trifluoromethyl)phenyl)isoindoline-4-carboxylic acid, 16 mg/mL protein |