Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5LCA

VIM-2 metallo-beta-lactamase in complex with 3-oxo-2-(3-(trifluoromethyl)phenyl)isoindoline-4-carboxylic acid (compound 17)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU FR-E+ SUPERBRIGHT
Temperature [K]100
Detector technologyCCD
Collection date2016-06-13
DetectorRIGAKU SATURN 944+
Wavelength(s)1.542
Spacegroup nameP 21 21 21
Unit cell lengths40.487, 65.313, 70.716
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution23.990 - 1.930
R-factor0.1342
Rwork0.130
R-free0.16970
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4c1d
RMSD bond length0.009
RMSD bond angle0.647
Data reduction softwareHKL-3000
Data scaling softwareSCALEPACK
Phasing softwarePHASER (2.6.0)
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.000
High resolution limit [Å]1.9304.1601.930
Rmerge0.0430.0300.093
Rmeas0.047
Rpim0.018
Total number of observations100610
Number of reflections14437
<I/σ(I)>31.72.4
Completeness [%]98.298.297.4
Redundancy76.57
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.42950.25 M Magnesium formate, 22.0% (v/v) Polyethylene glycol 3350, 5 mM 3-oxo-2-(3-(trifluoromethyl)phenyl)isoindoline-4-carboxylic acid, 16 mg/mL protein

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon