Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5KV1

Human cyclophilin A at 278K, Data set 3

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRL BEAMLINE BL7-1
Synchrotron siteSSRL
BeamlineBL7-1
Temperature [K]278
Detector technologyCCD
Collection date2014-04-17
DetectorADSC QUANTUM 315r
Wavelength(s)1.100
Spacegroup nameP 21 21 21
Unit cell lengths42.886, 52.562, 89.256
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution34.020 - 1.700
R-factor0.1583
Rwork0.156
R-free0.19820
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5f66
RMSD bond length0.006
RMSD bond angle0.808
Data reduction softwareXDS
Data scaling softwareAimless (0.1.26)
Refinement softwarePHENIX (1.10.1_2155)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]38.6601.520
High resolution limit [Å]1.4901.490
Rmerge0.1180.896
Rmeas0.141
Rpim0.076
Total number of observations80442
Number of reflections28413
<I/σ(I)>16.1
Completeness [%]85.564.5
Redundancy2.82.3
CC(1/2)0.9850.418
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.5291CRYSTALS WERE GROWN BY MIXING EQUAL VOLUMES OF WELL SOLUTION (100 MM HEPES PH 7.5, 23% PEG 3350, 5 MM TCEP) AND PROTEIN (60 MG/ML IN 20 MM HEPES PH 7.5, 100 MM NACL, 0.5 MM TCEP) IN THE HANGING-DROP FORMAT.

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon