5KT9
Crystal structure of the catalase-peroxidase from B. pseudomallei treated with hydrogen peroxide and carbon monoxide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CLSI BEAMLINE 08ID-1 |
Synchrotron site | CLSI |
Beamline | 08ID-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-10-09 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.9795 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 100.854, 113.790, 174.633 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 50.000 - 1.880 |
R-factor | 0.1786 |
Rwork | 0.177 |
R-free | 0.21300 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1MWV |
RMSD bond length | 0.028 |
RMSD bond angle | 2.241 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.22) |
Phasing software | REFMAC (5.8.0151) |
Refinement software | REFMAC (5.8.0151) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 100.854 | 47.672 | 1.980 |
High resolution limit [Å] | 1.880 | 5.950 | 1.880 |
Rmerge | 0.023 | 0.570 | |
Rmeas | 0.102 | ||
Rpim | 0.046 | ||
Total number of observations | 719794 | ||
Number of reflections | 162264 | ||
<I/σ(I)> | 10.7 | 23.6 | 1.3 |
Completeness [%] | 99.5 | 97 | 99.7 |
Redundancy | 4.4 | 4.5 | 4.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.1 | 293 | MPD, 0.1 M sodium citrate |