5KSF
Crystal structure of the D141A variant of the catalase-peroxidase from B. pseudomallei treated with acetate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CLSI BEAMLINE 08ID-1 |
Synchrotron site | CLSI |
Beamline | 08ID-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-10-09 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.9795 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 100.692, 115.474, 174.586 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.375 - 1.750 |
R-factor | 0.1492 |
Rwork | 0.148 |
R-free | 0.17510 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1MWV |
RMSD bond length | 0.031 |
RMSD bond angle | 2.438 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.21) |
Phasing software | REFMAC (5.8.0151) |
Refinement software | REFMAC (5.8.0151) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 96.313 | 48.375 | 1.840 |
High resolution limit [Å] | 1.750 | 5.530 | 1.750 |
Rmerge | 0.041 | 0.481 | |
Rmeas | 0.069 | ||
Rpim | 0.030 | ||
Total number of observations | 1002935 | ||
Number of reflections | 203501 | ||
<I/σ(I)> | 14.7 | 11.7 | 1.6 |
Completeness [%] | 99.6 | 97.4 | 99.9 |
Redundancy | 4.9 | 4.9 | 5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.1 | 293 | MPD, 0.1 M sodium citrate |