Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5KO6

Crystal Structure of Isoform 2 of Purine Nucleoside Phosphorylase from Schistosoma mansoni in complex with cytosine and ribose-1-phosphate

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04
Synchrotron siteDiamond
BeamlineI04
Temperature [K]100
Detector technologyPIXEL
Collection date2015-07-21
DetectorDECTRIS PILATUS 6M-F
Wavelength(s)0.9795
Spacegroup nameP 21 3
Unit cell lengths98.640, 98.640, 98.640
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution44.113 - 1.420
R-factor0.1627
Rwork0.162
R-free0.17850
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1cxq
RMSD bond length0.006
RMSD bond angle0.953
Data reduction softwarexia2
Data scaling softwarexia2
Phasing softwarePHASER
Refinement softwarePHENIX (1.10.1_2155)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]44.11344.1101.460
High resolution limit [Å]1.4206.3501.420
Rmerge0.0790.0371.607
Number of reflections60417
<I/σ(I)>15.9
Completeness [%]100.099.2100
Redundancy11.410.69.1
CC(1/2)0.9990.540
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4.52910.1 M Lithium chloride, 0.1 M Cadmium chloride hemi(pentahydrate), 0.1 M Sodium acetate 4.5 30 % v/v PEG 400

245663

PDB entries from 2025-12-03

PDB statisticsPDBj update infoContact PDBjnumon