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5KO4

Bromodomain from Trypanosoma brucei Tb427.10.8150

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 22-ID
Synchrotron siteAPS
Beamline22-ID
Temperature [K]100
Detector technologyCCD
Collection date2016-04-03
DetectorMARMOSAIC 300 mm CCD
Wavelength(s)0.97901
Spacegroup nameP 1 21 1
Unit cell lengths45.374, 52.756, 47.027
Unit cell angles90.00, 117.27, 90.00
Refinement procedure
Resolution41.800 - 1.440
R-factor0.162
Rwork0.161
R-free0.17600
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3o33
RMSD bond length0.008
RMSD bond angle0.740
Data reduction softwareHKL-3000
Data scaling softwareHKL-3000
Phasing softwareBALBES
Refinement softwareBUSTER (2.10.2)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0001.460
High resolution limit [Å]1.4401.440
Rmerge0.0820.358
Number of reflections35635
<I/σ(I)>9.1
Completeness [%]99.296.5
Redundancy6.74.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.5293The 12 mg/ml (0.95 mM) protein in the base buffer (100 mM NaCl, 0.5 mM TCEP, 20 mM HEPES pH7,5) was crystallized at 20 ??C in 30% PEGM5K, 0.2 M NH4SO4, 0.1 M MES pH 6.5, in vapor diffusion sitting drop method. Final concentration of 3% DMSO and 1 mM SGC-CBP30 (IUPAC name: 8-(3-chloro-4-methoxy-phenethyl)-4-(3,5-dimethyl-isoxazol-4-yl)-9-(2-(morpholin-4-yl)-propyl)-7,9-diaza-bicyclo[4.3.0]nona-1(6),2,4,7-tetraene) was added to the concentrated protein immediately prior to setting up the crystallization plate.

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PDB entries from 2024-05-15

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