5KD6
Crystal structure of the aromatic prenyltransferase AtaPT from Aspergillus terreus A8-4 in complex with dimethylallyl S-thiolodiphosphate and (-)-butyrolactone II
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-03-07 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.99999 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 96.060, 134.140, 68.620 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.219 - 1.840 |
R-factor | 0.1821 |
Rwork | 0.180 |
R-free | 0.22785 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5kcg |
RMSD bond length | 0.018 |
RMSD bond angle | 1.878 |
Data scaling software | SCALA (3.3.21) |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 134.140 | 45.219 | 1.940 |
High resolution limit [Å] | 1.840 | 5.820 | 1.840 |
Rmerge | 0.048 | 0.366 | |
Rmeas | 0.088 | ||
Rpim | 0.040 | ||
Total number of observations | 355651 | ||
Number of reflections | 77116 | ||
<I/σ(I)> | 12.3 | 11.3 | 2.1 |
Completeness [%] | 99.4 | 95.4 | 99.5 |
Redundancy | 4.6 | 4.5 | 4.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 289 | 25 mM Bis-Tris pH 6.0, 0.2 M (NH4)2SO4, 17% PEG 3350, 3.3% DDM |