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5K7D

The structure of native pistol ribozyme, bound to Iridium

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-C
Synchrotron siteAPS
Beamline24-ID-C
Temperature [K]100
Detector technologyPIXEL
Collection date2016-03-15
DetectorDECTRIS PILATUS 6M-F
Wavelength(s)1.1052
Spacegroup nameP 32 2 1
Unit cell lengths56.573, 56.573, 88.297
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution49.000 - 2.680
Rwork0.190
R-free0.24000
Structure solution methodSAD
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwareAutoSol
Refinement softwarePHENIX
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]88.3002.810
High resolution limit [Å]2.6802.680
Rpim0.0380.618
Number of reflections8819
<I/σ(I)>14.91.2
Completeness [%]99.8
Redundancy6.26.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2930.1 M Na-cacodylate, pH 6.5, Mg(OAc)2 0.2 M and 32% MPD and supplemented with 5 mM Ir(NH3)63+Cl3

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PDB entries from 2024-05-15

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