5K7D
The structure of native pistol ribozyme, bound to Iridium
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-03-15 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 1.1052 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 56.573, 56.573, 88.297 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 49.000 - 2.680 |
Rwork | 0.190 |
R-free | 0.24000 |
Structure solution method | SAD |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | AutoSol |
Refinement software | PHENIX |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 88.300 | 2.810 |
High resolution limit [Å] | 2.680 | 2.680 |
Rpim | 0.038 | 0.618 |
Number of reflections | 8819 | |
<I/σ(I)> | 14.9 | 1.2 |
Completeness [%] | 99.8 | |
Redundancy | 6.2 | 6.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.1 M Na-cacodylate, pH 6.5, Mg(OAc)2 0.2 M and 32% MPD and supplemented with 5 mM Ir(NH3)63+Cl3 |