5K48
VIM-2 Metallo Beta Lactamase in complex with 3-(mercaptomethyl)-[1,1'-biphenyl]-4-carboxylic acid
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E SUPERBRIGHT |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-05-29 |
Detector | RIGAKU SATURN 944+ |
Wavelength(s) | 1.542 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 102.888, 79.542, 67.892 |
Unit cell angles | 90.00, 130.60, 90.00 |
Refinement procedure
Resolution | 25.819 - 1.744 |
R-factor | 0.1673 |
Rwork | 0.166 |
R-free | 0.19360 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4c1d |
RMSD bond length | 0.003 |
RMSD bond angle | 0.600 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.810 |
High resolution limit [Å] | 1.744 | 3.770 | 1.750 |
Rmerge | 0.079 | 0.038 | 0.389 |
Number of reflections | 40087 | ||
<I/σ(I)> | 14.2 | 1.875 | |
Completeness [%] | 95.0 | 99.3 | 85.1 |
Redundancy | 3.1 | 3.5 | 2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.2 M MAGNESIUM FORMATE, 20 % W/V PEG3350, 1 MM TCEP, 213 uM protein, 12.5 uM inhibitor. |