5K2Z
PDX1.3-adduct (Arabidopsis)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-05-22 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97858 |
Spacegroup name | H 3 |
Unit cell lengths | 178.460, 178.460, 115.810 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 92.680 - 1.800 |
R-factor | 0.1814 |
Rwork | 0.180 |
R-free | 0.20360 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2nv2 |
RMSD bond length | 0.010 |
RMSD bond angle | 1.427 |
Data reduction software | MOSFLM |
Data scaling software | SCALA (3.3.22) |
Phasing software | PHASER (2.5.7) |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 92.680 | 44.615 | 1.860 |
High resolution limit [Å] | 1.761 | 5.570 | 1.761 |
Rmerge | 0.037 | 0.882 | |
Number of reflections | 135507 | ||
<I/σ(I)> | 9.9 | 13.2 | 0.8 |
Completeness [%] | 99.5 | 99.4 | 99.2 |
Redundancy | 5.7 | 6.1 | 5.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 291 | 50 mM MES.OH pH 6.5, 0.7 M ammonium sulfate, 5% 1,4-dioxane, 10 mM Tris.HCl pH 6.5, 0.1 M potassium chloride, and 5 mM dithiothreitol. |