5JAZ
Structure of Plasmodium falciparum DXR in complex with a beta-substituted fosmidomycin analogue, LC51 and manganese
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-2 |
Synchrotron site | ESRF |
Beamline | ID23-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-02-19 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.87260 |
Spacegroup name | P 1 |
Unit cell lengths | 51.768, 56.543, 87.000 |
Unit cell angles | 103.66, 103.34, 100.18 |
Refinement procedure
Resolution | 30.000 - 1.400 |
R-factor | 0.18649 |
Rwork | 0.185 |
R-free | 0.20721 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 5JAZ (LC51) |
RMSD bond length | 0.008 |
RMSD bond angle | 1.198 |
Data reduction software | XDS |
Data scaling software | SCALA |
Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.360 | 1.480 |
High resolution limit [Å] | 1.400 | 1.400 |
Rmerge | 0.037 | 0.778 |
Number of reflections | 172755 | |
<I/σ(I)> | 7.5 | 1.3 |
Completeness [%] | 96.9 | 95.3 |
Redundancy | 3.6 | 3.5 |
CC(1/2) | 0.997 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293 | 10% PEG 4000, 20% glycerol 0.1M bicine Trizma pH 8.5 0.02M each of the carboxylic acids: sodium formate ammonium acetate trisodiumm citrate sodium potassium tartrate sodium oxamate |