5J9G
Structure of Lactobacillus acidophilus glyceraldehyde-3-phosphate dehydrogenase at 2.21 angstrom resolution
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E SUPERBRIGHT |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2015-03-25 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.54178 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 114.990, 114.990, 113.300 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.330 - 2.210 |
R-factor | 0.20427 |
Rwork | 0.203 |
R-free | 0.22620 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4qx6 |
RMSD bond length | 0.012 |
RMSD bond angle | 1.525 |
Data reduction software | iMOSFLM (1.0.7) |
Data scaling software | Aimless (0.2.1) |
Phasing software | PHASER (2.5.5) |
Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 38.330 | |
High resolution limit [Å] | 2.210 | |
Rmerge | 0.093 | |
Number of reflections | 38437 | |
<I/σ(I)> | 16.5 | |
Completeness [%] | 99.9 | 97.3 |
Redundancy | 17.2 | |
CC(1/2) | 0.999 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | MICROBATCH | 7.4 | 295 | 10% w/v PEG 1000, 10% w/v PEG 8000 |