Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5IZZ

Crystal structure of a marine metagenome TRAP solute binding protein specific for aromatic acid ligands (Sorcerer II Global Ocean Sampling Expedition, unidentified microbe, locus tag GOS_1523157, Triple Surface Mutant K158A_K223A_K313A) in complex with metahydroxyphenylacetate, thermal exchange of ligand

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]100
Detector technologyPIXEL
Collection date2016-03-15
DetectorDECTRIS PILATUS 200K
Wavelength(s)1.54056
Spacegroup nameP 1 21 1
Unit cell lengths39.784, 84.275, 45.910
Unit cell angles90.00, 113.48, 90.00
Refinement procedure
Resolution29.786 - 1.600
R-factor0.1166
Rwork0.115
R-free0.15310
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5i7i
RMSD bond length0.008
RMSD bond angle0.990
Data reduction softwareHKL-3000
Data scaling softwareHKL-2000
Phasing softwareMOLREP
Refinement softwarePHENIX ((1.10.1_2155))
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]100.000100.0001.630
High resolution limit [Å]1.6004.3401.600
Rmerge0.0520.0350.265
Rmeas0.0590.0390.322
Rpim0.0270.0150.180
Total number of observations143046
Number of reflections34550
<I/σ(I)>12.3
Completeness [%]94.099.880.3
Redundancy4.16.22.8
CC(1/2)0.9990.866
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.5298Protein (10 mM HEPES pH 7.5, 5 mM DTT, 10 mM 3-Hydroxyphenylacetic acid, soak 30 minutes at 60 C); Reservoir (MCSG1 (A2), 0.1 M CHES pH 9.5, 30 %(w/v) PEG 3000); Cryoprotection (20% diethylene glycol, 80% reservoir)

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon