5IZ4
Crystal structure of a putative short-chain dehydrogenase/reductase from Burkholderia xenovorans
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-G |
Synchrotron site | APS |
Beamline | 21-ID-G |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-03-17 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.97856 |
Spacegroup name | I 4 2 2 |
Unit cell lengths | 84.610, 84.610, 135.250 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 35.865 - 1.750 |
R-factor | 0.1543 |
Rwork | 0.152 |
R-free | 0.18200 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4e3z |
RMSD bond length | 0.005 |
RMSD bond angle | 0.797 |
Data scaling software | XDS |
Phasing software | MOLREP |
Refinement software | PHENIX (dev_2356) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 35.865 | 35.865 | 1.800 |
High resolution limit [Å] | 1.750 | 7.830 | 1.750 |
Rmerge | 0.058 | 0.029 | 0.529 |
Number of reflections | 25142 | ||
<I/σ(I)> | 30.22 | 72.91 | 4.64 |
Completeness [%] | 99.9 | 96.5 | 99.9 |
Redundancy | 12 | ||
CC(1/2) | 1.000 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 290 | Microlytic Morpheus f12: 12.5% w/v PEG 1000, 12.5% w/v PEG 3350, 12.5% v/v MPD; 20mM of each D-glucose, D-mannose, D-galactose, L-fucose, D-xylose, N-acetyld-glucosamine; 10mM bicine/Trizma base pH 8.5; BuxeA.00010.e.B1.PS37833 at 12.8mg/ml + 3mM NAD, direct cryo; tray: 270602f12, puck jra0-6; only the ADP moiety of NAD was observed in the density |