5IZ4
Crystal structure of a putative short-chain dehydrogenase/reductase from Burkholderia xenovorans
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | APS BEAMLINE 21-ID-G |
| Synchrotron site | APS |
| Beamline | 21-ID-G |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2016-03-17 |
| Detector | RAYONIX MX-300 |
| Wavelength(s) | 0.97856 |
| Spacegroup name | I 4 2 2 |
| Unit cell lengths | 84.610, 84.610, 135.250 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 35.865 - 1.750 |
| R-factor | 0.1543 |
| Rwork | 0.152 |
| R-free | 0.18200 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 4e3z |
| RMSD bond length | 0.005 |
| RMSD bond angle | 0.797 |
| Data scaling software | XDS |
| Phasing software | MOLREP |
| Refinement software | PHENIX (dev_2356) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 35.865 | 35.865 | 1.800 |
| High resolution limit [Å] | 1.750 | 7.830 | 1.750 |
| Rmerge | 0.058 | 0.029 | 0.529 |
| Number of reflections | 25142 | ||
| <I/σ(I)> | 30.22 | 72.91 | 4.64 |
| Completeness [%] | 99.9 | 96.5 | 99.9 |
| Redundancy | 12 | ||
| CC(1/2) | 1.000 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 290 | Microlytic Morpheus f12: 12.5% w/v PEG 1000, 12.5% w/v PEG 3350, 12.5% v/v MPD; 20mM of each D-glucose, D-mannose, D-galactose, L-fucose, D-xylose, N-acetyld-glucosamine; 10mM bicine/Trizma base pH 8.5; BuxeA.00010.e.B1.PS37833 at 12.8mg/ml + 3mM NAD, direct cryo; tray: 270602f12, puck jra0-6; only the ADP moiety of NAD was observed in the density |






