Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5IZ4

Crystal structure of a putative short-chain dehydrogenase/reductase from Burkholderia xenovorans

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-G
Synchrotron siteAPS
Beamline21-ID-G
Temperature [K]100
Detector technologyCCD
Collection date2016-03-17
DetectorRAYONIX MX-300
Wavelength(s)0.97856
Spacegroup nameI 4 2 2
Unit cell lengths84.610, 84.610, 135.250
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution35.865 - 1.750
R-factor0.1543
Rwork0.152
R-free0.18200
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4e3z
RMSD bond length0.005
RMSD bond angle0.797
Data scaling softwareXDS
Phasing softwareMOLREP
Refinement softwarePHENIX (dev_2356)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]35.86535.8651.800
High resolution limit [Å]1.7507.8301.750
Rmerge0.0580.0290.529
Number of reflections25142
<I/σ(I)>30.2272.914.64
Completeness [%]99.996.599.9
Redundancy12
CC(1/2)1.000
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.5290Microlytic Morpheus f12: 12.5% w/v PEG 1000, 12.5% w/v PEG 3350, 12.5% v/v MPD; 20mM of each D-glucose, D-mannose, D-galactose, L-fucose, D-xylose, N-acetyld-glucosamine; 10mM bicine/Trizma base pH 8.5; BuxeA.00010.e.B1.PS37833 at 12.8mg/ml + 3mM NAD, direct cryo; tray: 270602f12, puck jra0-6; only the ADP moiety of NAD was observed in the density

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon