5IYW
Protruding domain of GII.4 human norovirus CHDC2094 in complex with 3-fucosyllactose (3FL)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-2 |
Synchrotron site | ESRF |
Beamline | ID23-2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-10-23 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0.97625 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 90.450, 107.110, 136.730 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 43.669 - 1.410 |
R-factor | 0.1411 |
Rwork | 0.140 |
R-free | 0.17140 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5iyn |
RMSD bond length | 0.008 |
RMSD bond angle | 1.221 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER (2.5.6) |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 43.670 | 1.440 | |
High resolution limit [Å] | 1.400 | 6.260 | 1.400 |
Rmerge | 0.090 | 0.037 | 0.865 |
Number of reflections | 128031 | ||
<I/σ(I)> | 9.13 | 28.73 | 1.41 |
Completeness [%] | 98.5 | 98 | 94 |
Redundancy | 4.6 | ||
CC(1/2) | 0.998 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.6 | 291 | Sodium citrate, PEG3350 |