Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5IYN

Protruding domain of GII.4 human norovirus CHDC2094

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID23-1
Synchrotron siteESRF
BeamlineID23-1
Temperature [K]100
Detector technologyCCD
Collection date2015-07-27
DetectorADSC QUANTUM 315r
Wavelength(s)0.97625
Spacegroup nameI 2 2 2
Unit cell lengths89.190, 105.920, 135.860
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution48.137 - 1.560
R-factor0.1528
Rwork0.152
R-free0.17520
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5iyn
RMSD bond length0.009
RMSD bond angle1.286
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER (2.5.6)
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]48.1401.590
High resolution limit [Å]1.5506.9101.550
Rmerge0.0730.0390.792
Number of reflections92170
<I/σ(I)>14.0433.922.46
Completeness [%]98.092.795.7
Redundancy5
CC(1/2)0.998
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5.6291Sodium citrate, PEG3350

246031

PDB entries from 2025-12-10

PDB statisticsPDBj update infoContact PDBjnumon