5IOJ
Crystal structure of the Sphingobium sp. TCM1 phosphotriesterase without the binuclear manganese center
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL7-1 |
Synchrotron site | SSRL |
Beamline | BL7-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-02-27 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.979499 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 88.309, 93.923, 112.494 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.959 - 1.760 |
R-factor | 0.162 |
Rwork | 0.161 |
R-free | 0.19230 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5hrm |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.790 |
High resolution limit [Å] | 1.760 | 4.780 | 1.760 |
Rmerge | 0.080 | 0.048 | 0.614 |
Rmeas | 0.083 | 0.050 | 0.637 |
Rpim | 0.022 | 0.013 | 0.168 |
Total number of observations | 1354929 | ||
Number of reflections | 93363 | ||
<I/σ(I)> | 10.5 | ||
Completeness [%] | 100.0 | 99.8 | 100 |
Redundancy | 14.5 | 14.1 | 14.3 |
CC(1/2) | 0.999 | 0.952 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.4 | 291 | 0.04 M citric acid, 0.06 M Bis-Tris propane, pH 6.4, 20% PEG 3350 |