5INP
Mouse Tdp2 reaction product (5'-phosphorylated DNA)-Mn2+ complex
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | ROTATING ANODE |
| Source details | RIGAKU MICROMAX-007 HF |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2012-05-05 |
| Detector | RIGAKU SATURN 92 |
| Wavelength(s) | 1.5418 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 54.592, 68.521, 166.899 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 29.842 - 1.947 |
| R-factor | 0.1442 |
| Rwork | 0.143 |
| R-free | 0.16960 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 4gz1 |
| RMSD bond length | 0.006 |
| RMSD bond angle | 1.026 |
| Data reduction software | DENZO |
| Data scaling software | SCALEPACK |
| Phasing software | PHENIX |
| Refinement software | PHENIX |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 50.000 | 50.000 | 2.020 |
| High resolution limit [Å] | 1.947 | 4.200 | 1.950 |
| Rmerge | 0.054 | 0.040 | 0.181 |
| Number of reflections | 82918 | ||
| <I/σ(I)> | 15.4 | ||
| Completeness [%] | 97.1 | 98.2 | 80.7 |
| Redundancy | 5.5 | 7.2 | 2 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 7 | 295 | 100 mM HEPES, 14-18% PEG3350, 200 mM sodium acetate, 10mM magnesium acetate. Crystal was soaked into the same condition with 5mM manganese chloride instead of magnesium acetate |






