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5INP

Mouse Tdp2 reaction product (5'-phosphorylated DNA)-Mn2+ complex

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]100
Detector technologyCCD
Collection date2012-05-05
DetectorRIGAKU SATURN 92
Wavelength(s)1.5418
Spacegroup nameP 21 21 21
Unit cell lengths54.592, 68.521, 166.899
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution29.842 - 1.947
R-factor0.1442
Rwork0.143
R-free0.16960
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4gz1
RMSD bond length0.006
RMSD bond angle1.026
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwarePHENIX
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.020
High resolution limit [Å]1.9474.2001.950
Rmerge0.0540.0400.181
Number of reflections82918
<I/σ(I)>15.4
Completeness [%]97.198.280.7
Redundancy5.57.22
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7295100 mM HEPES, 14-18% PEG3350, 200 mM sodium acetate, 10mM magnesium acetate. Crystal was soaked into the same condition with 5mM manganese chloride instead of magnesium acetate

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