5INP
Mouse Tdp2 reaction product (5'-phosphorylated DNA)-Mn2+ complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-05-05 |
Detector | RIGAKU SATURN 92 |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 54.592, 68.521, 166.899 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.842 - 1.947 |
R-factor | 0.1442 |
Rwork | 0.143 |
R-free | 0.16960 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4gz1 |
RMSD bond length | 0.006 |
RMSD bond angle | 1.026 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHENIX |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.020 |
High resolution limit [Å] | 1.947 | 4.200 | 1.950 |
Rmerge | 0.054 | 0.040 | 0.181 |
Number of reflections | 82918 | ||
<I/σ(I)> | 15.4 | ||
Completeness [%] | 97.1 | 98.2 | 80.7 |
Redundancy | 5.5 | 7.2 | 2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 295 | 100 mM HEPES, 14-18% PEG3350, 200 mM sodium acetate, 10mM magnesium acetate. Crystal was soaked into the same condition with 5mM manganese chloride instead of magnesium acetate |