Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5INO

Human Tdp2 reaction product (5'-phosphorylated DNA)-Mg2+ complex

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 22-ID
Synchrotron siteAPS
Beamline22-ID
Temperature [K]100
Detector technologyCCD
Collection date2012-12-08
DetectorMARMOSAIC 300 mm CCD
Wavelength(s)1.000
Spacegroup nameP 31
Unit cell lengths69.663, 69.663, 120.677
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution34.832 - 3.205
R-factor0.216
Rwork0.214
R-free0.26360
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4gz1
RMSD bond length0.003
RMSD bond angle0.783
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwarePHASER
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0003.310
High resolution limit [Å]3.2006.8903.200
Rmerge0.0820.0430.574
Total number of observations41889
Number of reflections10786
<I/σ(I)>8.5
Completeness [%]100.099.6100
Redundancy3.93.73.9
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP729527% PEG600, 90 mM TRIS, 9% glycerol, 450 mM ammonium sulfate

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon