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5IEK

Structure of HLA-B*40:02 in complex with the endogenous peptide REFSKEPEL

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALBA BEAMLINE XALOC
Synchrotron siteALBA
BeamlineXALOC
Temperature [K]100
Detector technologyPIXEL
Collection date2015-09-24
DetectorDECTRIS PILATUS3 6M
Wavelength(s)1.00556
Spacegroup nameP 21 21 21
Unit cell lengths51.260, 82.201, 111.145
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution24.975 - 1.800
R-factor0.163
Rwork0.162
R-free0.18810
Structure solution methodMIR
RMSD bond length0.009
RMSD bond angle1.036
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (1.10_2148)
Data quality characteristics
 Overall
Number of reflections46622
<I/σ(I)>10.8
Completeness [%]99.9
Redundancy6.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP294150 mM Tris 8.5, 23% PEG8K, 70 mM potassium thiocyanate

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PDB entries from 2024-05-15

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