5IDO
RNA Editing TUTase 1 from Trypanosoma brucei in complex with UTP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-12-05 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 1.000 |
Spacegroup name | P 21 2 21 |
Unit cell lengths | 59.350, 66.340, 128.910 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.727 - 2.200 |
R-factor | 0.2498 |
Rwork | 0.248 |
R-free | 0.28790 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5hzd |
RMSD bond length | 0.003 |
RMSD bond angle | 0.778 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 19.720 | 2.260 | |
High resolution limit [Å] | 2.200 | 9.840 | 2.200 |
Rmerge | 0.071 | 0.032 | 0.654 |
Number of reflections | 26453 | ||
<I/σ(I)> | 22.88 | 53.95 | 3.91 |
Completeness [%] | 99.4 | 82 | 99.8 |
Redundancy | 12.3 | ||
CC(1/2) | 0.999 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 292 | 0.1M Tris pH8.5, between 5% and 8% PEG 3350, 0.2M Lithium chloride.Complex of D473A with UTP was obtained by soaking 1.5mM UTP supplemented with 1mM MgCl2 |