Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5IDO

RNA Editing TUTase 1 from Trypanosoma brucei in complex with UTP

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X06DA
Synchrotron siteSLS
BeamlineX06DA
Temperature [K]100
Detector technologyPIXEL
Collection date2014-12-05
DetectorDECTRIS PILATUS 2M
Wavelength(s)1.000
Spacegroup nameP 21 2 21
Unit cell lengths59.350, 66.340, 128.910
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution19.727 - 2.200
R-factor0.2498
Rwork0.248
R-free0.28790
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5hzd
RMSD bond length0.003
RMSD bond angle0.778
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX (1.9_1692)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]19.7202.260
High resolution limit [Å]2.2009.8402.200
Rmerge0.0710.0320.654
Number of reflections26453
<I/σ(I)>22.8853.953.91
Completeness [%]99.48299.8
Redundancy12.3
CC(1/2)0.999
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.52920.1M Tris pH8.5, between 5% and 8% PEG 3350, 0.2M Lithium chloride.Complex of D473A with UTP was obtained by soaking 1.5mM UTP supplemented with 1mM MgCl2

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon