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5I4M

Crystal structure of Amidase, hydantoinase/carbamoylase family from Burkholderia vietnamiensis

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-F
Synchrotron siteAPS
Beamline21-ID-F
Temperature [K]100
Detector technologyCCD
Collection date2015-12-10
DetectorRAYONIX MX-225
Wavelength(s)0.97872
Spacegroup nameP 1 21 1
Unit cell lengths47.460, 124.230, 77.040
Unit cell angles90.00, 101.94, 90.00
Refinement procedure
Resolution47.935 - 1.800
R-factor0.1393
Rwork0.139
R-free0.17120
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4wjb
RMSD bond length0.005
RMSD bond angle0.812
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMOLREP
Refinement softwarePHENIX (dev_2313)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]47.93550.0001.850
High resolution limit [Å]1.8008.0501.800
Rmerge0.0920.0290.516
Number of reflections80654
<I/σ(I)>12.3334.632.59
Completeness [%]99.998.799.9
Redundancy3.8
CC(1/2)0.996
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.5290MCSG1 screen B10: 24% PEG 4000, 20% glycerol, 160mM MgCl2, 100mM Tris/HCl pH 8.5; BuviA.12245.b.B2.PS02523 at 18.3 mg/ml, + 3mM Alanine; cryo: direct; tray 267436b10, puck LWQ9-7

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PDB entries from 2024-05-15

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