Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5I2H

Crystal structure of O-methyltransferase family 2 protein Plim_1147 from Planctomyces limnophilus DSM 3776 complex with Apigenin

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 19-ID
Synchrotron siteAPS
Beamline19-ID
Temperature [K]100
Detector technologyCCD
Collection date2012-06-24
DetectorADSC QUANTUM 315r
Wavelength(s)0.97926
Spacegroup nameP 21 21 21
Unit cell lengths66.516, 83.192, 119.099
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution29.893 - 1.551
R-factor0.1556
Rwork0.155
R-free0.19740
Structure solution methodSAD
RMSD bond length0.011
RMSD bond angle1.124
Data reduction softwareHKL-3000
Data scaling softwareSCALEPACK
Phasing softwareHKL-3000
Refinement softwarePHENIX ((1.10_2155: ???))
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0001.580
High resolution limit [Å]1.5504.2101.550
Rmerge0.0560.0410.605
Rmeas0.0600.0440.662
Rpim0.0220.0160.264
Total number of observations741546
Number of reflections95895
<I/σ(I)>15.7
Completeness [%]99.598.194.6
Redundancy7.77.75.9
CC(1/2)0.9980.861
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP5.9289magnesium formate, PEG3350

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon