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5I0P

Crystal Structure of a Beta-lactamase domain protein from Burkholderia ambifaria

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-F
Synchrotron siteAPS
Beamline21-ID-F
Temperature [K]100
Detector technologyCCD
Collection date2015-12-11
DetectorMARMOSAIC 225 mm CCD
Wavelength(s)0.97872
Spacegroup nameP 21 21 21
Unit cell lengths45.170, 141.230, 236.990
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution44.935 - 2.500
R-factor0.1686
Rwork0.166
R-free0.22850
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2zo4
RMSD bond length0.011
RMSD bond angle1.211
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMR-Rosetta
Refinement softwarePHENIX (dev_2299)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.560
High resolution limit [Å]2.50011.1802.500
Rmerge0.0980.0410.529
Number of reflections53685
<I/σ(I)>13.228.163.01
Completeness [%]99.995.9100
Redundancy5.7
CC(1/2)0.996
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.5290BuamA.15997.a.B1.PW37786 at 26 mg/ml, protein was mixed 1:1 with Morpheus (a1): 10% (w/v) PEG-20000, 20% (v/v) PEG MME 500, 100 mM MES/imidazole, pH = 6.5, 0.03 M each magnesium chloride, sodium fluoride, sodium bromide, sodium iodide

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PDB entries from 2024-05-15

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