5I0P
Crystal Structure of a Beta-lactamase domain protein from Burkholderia ambifaria
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-12-11 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0.97872 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 45.170, 141.230, 236.990 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 44.935 - 2.500 |
R-factor | 0.1686 |
Rwork | 0.166 |
R-free | 0.22850 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2zo4 |
RMSD bond length | 0.011 |
RMSD bond angle | 1.211 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MR-Rosetta |
Refinement software | PHENIX (dev_2299) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.560 |
High resolution limit [Å] | 2.500 | 11.180 | 2.500 |
Rmerge | 0.098 | 0.041 | 0.529 |
Number of reflections | 53685 | ||
<I/σ(I)> | 13.2 | 28.16 | 3.01 |
Completeness [%] | 99.9 | 95.9 | 100 |
Redundancy | 5.7 | ||
CC(1/2) | 0.996 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 290 | BuamA.15997.a.B1.PW37786 at 26 mg/ml, protein was mixed 1:1 with Morpheus (a1): 10% (w/v) PEG-20000, 20% (v/v) PEG MME 500, 100 mM MES/imidazole, pH = 6.5, 0.03 M each magnesium chloride, sodium fluoride, sodium bromide, sodium iodide |