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5HBQ

C63D mutant of the rhodanese domain of YgaP

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRL BEAMLINE BL12-2
Synchrotron siteSSRL
BeamlineBL12-2
Temperature [K]100
Detector technologyCCD
Collection date2013-03-04
DetectorADSC QUANTUM 315r
Wavelength(s)1.127
Spacegroup nameP 31
Unit cell lengths43.896, 43.896, 52.667
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution38.000 - 1.660
R-factor0.18742
Rwork0.186
R-free0.22252
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5hbl
RMSD bond length0.012
RMSD bond angle1.579
Data reduction softwareXDS
Data scaling softwareSCALA
Phasing softwareMOLREP
Refinement softwareREFMAC (5.8.0124)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]38.0001.750
High resolution limit [Å]1.6601.660
Rmerge0.0680.670
Number of reflections13404
<I/σ(I)>15.32
Completeness [%]99.698
Redundancy5.24
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP8.52950.2 M sodium acetate in 0.1 M Tris HCl pH 8.5, and 30% PEG 4000

246031

PDB entries from 2025-12-10

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