5HA4
Structure of a diaminopimelate epimerase from Acinetobacter baumannii
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | ROTATING ANODE |
| Source details | RIGAKU FR-E+ SUPERBRIGHT |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2015-10-01 |
| Detector | RIGAKU SATURN 944+ |
| Wavelength(s) | 1.5418 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 70.380, 96.180, 106.240 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 50.000 - 1.850 |
| R-factor | 0.165 |
| Rwork | 0.164 |
| R-free | 0.18980 |
| Structure solution method | MOLECULAR REPLACEMENT |
| RMSD bond length | 0.006 |
| RMSD bond angle | 0.873 |
| Data scaling software | XSCALE |
| Phasing software | PHASER (2.6.0) |
| Refinement software | PHENIX |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 50.000 | 1.900 | |
| High resolution limit [Å] | 1.850 | 8.270 | 1.850 |
| Rmerge | 0.048 | 0.024 | 0.491 |
| Rmeas | 0.050 | 0.025 | 0.535 |
| Total number of observations | 636623 | ||
| Number of reflections | 61957 | 805 | 4387 |
| <I/σ(I)> | 31.52 | 95.2 | 3.83 |
| Completeness [%] | 99.4 | 98.8 | 96.3 |
| Redundancy | 10.28 | 6.33 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 290 | MORPHEUS F4 (265800f4): 12.5% PEG 1000, 12.5% PEG 3350, 12.5% MPD, 20mM of each monosaccharide, 100mM MES/imidazole pH6.5; [prot]=18.7mg/mL; direct cryo, puck khx0-8 |






