5H0E
Crystal structure of HCK complexed with a pyrrolo-pyrimidine inhibitor (S)-2-(((1r,4S)-4-(4-amino-5-(4-phenoxyphenyl)-7H-pyrrolo[2,3-d]pyrimidin-7-yl)cyclohexyl)amino)-4-methylpentanamide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE AR-NE3A |
Synchrotron site | Photon Factory |
Beamline | AR-NE3A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-02-16 |
Detector | ADSC QUANTUM 270 |
Wavelength(s) | 0.91 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 43.056, 85.351, 129.090 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 30.301 - 2.100 |
R-factor | 0.1878 |
Rwork | 0.185 |
R-free | 0.22550 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3vs3 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.034 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER (2.5.6) |
Refinement software | PHENIX (1.9_1690) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.140 |
High resolution limit [Å] | 2.100 | 5.700 | 2.100 |
Rmerge | 0.134 | 0.080 | 0.879 |
Rmeas | 0.146 | 0.090 | 0.948 |
Rpim | 0.056 | 0.039 | 0.351 |
Total number of observations | 200282 | ||
Number of reflections | 28668 | ||
<I/σ(I)> | 7 | ||
Completeness [%] | 99.8 | 97.7 | 100 |
Redundancy | 7 | 5.4 | 7.2 |
CC(1/2) | 0.992 | 0.714 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.22-0.25M ammonium formate, 12-22% PEG 3350 |