5H0B
Crystal structure of HCK complexed with a pyrrolo-pyrimidine inhibitor (S)-2-(((1r,4S)-4-(4-amino-5-(4-phenoxyphenyl)-7H-pyrrolo[2,3-d]pyrimidin-7-yl)cyclohexyl)amino)-4-methylpentanoic acid
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL32XU |
Synchrotron site | SPring-8 |
Beamline | BL32XU |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-12-17 |
Detector | RAYONIX MX225HE |
Wavelength(s) | 1 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 43.177, 85.578, 130.277 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.725 - 1.651 |
R-factor | 0.181 |
Rwork | 0.180 |
R-free | 0.20490 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3vs3 |
RMSD bond length | 0.007 |
RMSD bond angle | 1.028 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER (2.5.5) |
Refinement software | PHENIX (1.9_1690) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.680 |
High resolution limit [Å] | 1.650 | 4.480 | 1.650 |
Rmerge | 0.075 | 0.048 | 0.477 |
Rmeas | 0.081 | ||
Rpim | 0.031 | ||
Total number of observations | 395904 | ||
Number of reflections | 57527 | ||
<I/σ(I)> | 11.5 | ||
Completeness [%] | 98.9 | 97 | 91.1 |
Redundancy | 6.9 | 6.4 | 5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.22-0.25 M ammonium formate, 12-22 % PEG 3350 |