Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5GX2

Luciferin-regenerating enzyme collected with serial synchrotron rotational crystallography with accumulated dose of 3.4 MGy (3rd measurement)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSPRING-8 BEAMLINE BL41XU
Synchrotron siteSPring-8
BeamlineBL41XU
Temperature [K]100
Detector technologyPIXEL
Collection date2016-05-30
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.9839
Spacegroup nameP 21 21 21
Unit cell lengths47.441, 76.781, 84.263
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution42.132 - 1.600
R-factor0.1585
Rwork0.158
R-free0.17170
Structure solution methodFOURIER SYNTHESIS
Starting model (for MR)5gtq
RMSD bond length0.006
RMSD bond angle0.858
Phasing softwarePHENIX (1.10.1_2155)
Refinement softwarePHENIX (1.10.1_2155)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0001.664
High resolution limit [Å]1.6003.3281.600
Total number of observations3133026
Number of reflections78536
<I/σ(I)>8.21414416.272.68
Completeness [%]100.0100100
Redundancy39.892941.736
CC(1/2)0.9930.9910.788
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1BATCH MODE7.5293150 uL of purified LRE solution (30 mg/ml LRE, 10 mM HEPES(pH7.5), 100 mM NaCl, 10 %(v/v) glycerol) was mixed with 240 uL of precipitant solution (31.3 %(w/v) PEG3350, 0.1 M HEPES(pH7.5), 10 %(v/v) MPD, 0.2 M MgCl2) and 15 uL of seed-crystal solution (31.3 %(w/v) PEG3350, 0.1 M HEPES(pH7.5), 10 %(v/v) MPD, 0.2 M MgCl2, 0.1 M NaCl, 5 %(v/v) glycerol)

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon